The full paper is available here: doi:10.1073/pnas.1621192114
You can follow this link to our dynamic islet eQTL explorer.
The data available here includes chromatin state predictions in various tissues; peak calls made on islet, adipose, and lymphoblastoid tissue data referenced in the paper; and transcription factor footprinting for islet data (ABCU196 and ABE1388).
ABCU196 is Islet 1 from the paper; ABE1388 is Islet 2.
Each subset of the data is available in its own
subdirectory, and also in a single file. For example, the
ABCU196 footprints are available in individual files by
transcription factor in the footprints.abcu196
directory, or all together
in footprints.abcu196.tar.gz
.
The full cis-eQTL scan results are available in the cis-eQTL-scan
directory. Allele 1 is the effect allele.
All of the data available here, except the cis-eQTL scan results, are included in everything.tar.gz
.
All coordinates are based on hg19.
Name Last modified Size Description
Parent Directory - footprints.abcu196/ 2017-03-13 13:03 - footprints.abe1388/ 2017-03-22 09:53 - cis-eQTL-scan/ 2017-04-21 08:34 - atacseq_IsletMuscleAdiposeGM/ 2017-09-14 16:49 - peaks.broad/ 2017-09-14 17:51 - atacseq_fastqc/ 2018-03-12 23:05 - chromatin_states/ 2018-09-10 13:09 - footprints.abe1388.tar.gz 2017-03-13 12:49 1.2G footprints.abcu196.tar.gz 2017-03-13 12:50 2.3G chromatin_states.tar.gz 2017-03-13 12:51 65M peaks.broad.tar.gz 2017-03-13 13:46 16M everything.tar.gz 2017-03-13 18:47 3.6G footprints.abcu196.updated_2018.tar.gz 2018-05-16 14:12 2.3G footprints.abe1388.updated_2018.tar.gz 2018-05-16 14:13 1.2G