Chromatin state predictions by tissue type

This is data from Genetic regulatory signatures underlying islet gene expression and type 2 diabetes, Varshney et al.

doi:10.1073/pnas.1621192114

BED file fields

1. chrom
2. chromStart
3. chromEnd
4. stateNumber_StateName
5. Color codes

Other files

emissions_statInfo.txt

Histone marks emission probabilities for each state

heatmap_emission.png

Chromatin state emission heatmap figure

sha256sum.txt

SHA-256 digests for all BED files

 Name                                        Last modified      Size  Description
 Parent Directory                                                 -   
 SubstantiaNigra.chromatinStates.bed.gz      2017-03-13 11:05  2.0M  
 StomachSmoothMuscle.chromatinStates.bed.gz  2017-03-13 11:05  2.3M  
 SkeletalMuscle.chromatinStates.bed.gz       2017-03-13 11:05  2.4M  
 sha256sum.txt                               2017-03-13 11:34  3.2K  
 RectalSmoothMuscle.chromatinStates.bed.gz   2017-03-13 11:05  1.6M  
 RectalMucosa.chromatinStates.bed.gz         2017-03-13 11:05  2.0M  
 NHLF.chromatinStates.bed.gz                 2017-03-13 11:05  2.2M  
 NHEK.chromatinStates.bed.gz                 2017-03-13 11:05  2.5M  
 model_13.txt                                2018-09-10 13:05   13K  
 MidFrontalLobe.chromatinStates.bed.gz       2017-03-13 11:05  1.9M  
 Liver.chromatinStates.bed.gz                2017-03-13 11:05  2.3M  
 K562.chromatinStates.bed.gz                 2017-03-13 11:05  2.0M  
 Islets.chromatinStates.bed.gz               2017-03-13 11:05  1.7M  
 InferiorTemporalLobe.chromatinStates.bed.gz 2017-03-13 11:05  2.1M  
 Huvec.chromatinStates.bed.gz                2017-03-13 11:05  2.1M  
 HSMM.chromatinStates.bed.gz                 2017-03-13 11:05  2.2M  
 HMEC.chromatinStates.bed.gz                 2017-03-13 11:05  2.2M  
 HippocampusMiddle.chromatinStates.bed.gz    2017-03-13 11:05  1.9M  
 HepG2.chromatinStates.bed.gz                2017-03-13 11:05  1.9M  
 heatmap_emission.png                        2017-03-13 11:05  447K  
 hASC-t4.chromatinStates.bed.gz              2017-03-13 11:05  2.1M  
 hASC-t3.chromatinStates.bed.gz              2017-03-13 11:05  2.3M  
 hASC-t2.chromatinStates.bed.gz              2017-03-13 11:05  2.2M  
 hASC-t1.chromatinStates.bed.gz              2017-03-13 11:05  2.2M  
 H1.chromatinStates.bed.gz                   2017-03-13 11:05  1.8M  
 GM12878.chromatinStates.bed.gz              2017-03-13 11:05  2.0M  
 ES-HUES64.chromatinStates.bed.gz            2017-03-13 11:05  2.1M  
 ES-HUES6.chromatinStates.bed.gz             2017-03-13 11:05  2.4M  
 emissions_statInfo.txt                      2017-03-13 11:05  1.7K  
 DuodenumMucosa.chromatinStates.bed.gz       2017-03-13 11:05  1.8M  
 ColonicMucosa.chromatinStates.bed.gz        2017-03-13 11:05  1.7M  
 CingulateGyrus.chromatinStates.bed.gz       2017-03-13 11:05  2.0M  
 CD34-PB.chromatinStates.bed.gz              2017-03-13 11:05  2.0M  
 AnteriorCaudate.chromatinStates.bed.gz      2017-03-13 11:05  2.1M  
 Adipose.chromatinStates.bed.gz              2017-03-13 11:05  2.6M