Chromatin state predictions by tissue type

This is data from Genetic regulatory signatures underlying islet gene expression and type 2 diabetes, Varshney et al.

doi:10.1073/pnas.1621192114

BED file fields

  1. chrom
  2. chromStart
  3. chromEnd
  4. stateNumber_StateName
  5. Color codes

Other files

emissions_statInfo.txt
Histone marks emission probabilities for each state
heatmap_emission.png
Chromatin state emission heatmap figure
sha256sum.txt
SHA-256 digests for all BED files
Icon  Name                                        Last modified      Size  Description
[PARENTDIR] Parent Directory                                                 -   
[   ] Adipose.chromatinStates.bed.gz              2017-03-13 11:05  2.6M  
[   ] NHEK.chromatinStates.bed.gz                 2017-03-13 11:05  2.5M  
[   ] ES-HUES6.chromatinStates.bed.gz             2017-03-13 11:05  2.4M  
[   ] SkeletalMuscle.chromatinStates.bed.gz       2017-03-13 11:05  2.4M  
[   ] StomachSmoothMuscle.chromatinStates.bed.gz  2017-03-13 11:05  2.3M  
[   ] hASC-t3.chromatinStates.bed.gz              2017-03-13 11:05  2.3M  
[   ] Liver.chromatinStates.bed.gz                2017-03-13 11:05  2.3M  
[   ] hASC-t1.chromatinStates.bed.gz              2017-03-13 11:05  2.2M  
[   ] HSMM.chromatinStates.bed.gz                 2017-03-13 11:05  2.2M  
[   ] hASC-t2.chromatinStates.bed.gz              2017-03-13 11:05  2.2M  
[   ] HMEC.chromatinStates.bed.gz                 2017-03-13 11:05  2.2M  
[   ] NHLF.chromatinStates.bed.gz                 2017-03-13 11:05  2.2M  
[   ] ES-HUES64.chromatinStates.bed.gz            2017-03-13 11:05  2.1M  
[   ] AnteriorCaudate.chromatinStates.bed.gz      2017-03-13 11:05  2.1M  
[   ] Huvec.chromatinStates.bed.gz                2017-03-13 11:05  2.1M  
[   ] InferiorTemporalLobe.chromatinStates.bed.gz 2017-03-13 11:05  2.1M  
[   ] hASC-t4.chromatinStates.bed.gz              2017-03-13 11:05  2.1M  
[   ] K562.chromatinStates.bed.gz                 2017-03-13 11:05  2.0M  
[   ] GM12878.chromatinStates.bed.gz              2017-03-13 11:05  2.0M  
[   ] CingulateGyrus.chromatinStates.bed.gz       2017-03-13 11:05  2.0M  
[   ] CD34-PB.chromatinStates.bed.gz              2017-03-13 11:05  2.0M  
[   ] SubstantiaNigra.chromatinStates.bed.gz      2017-03-13 11:05  2.0M  
[   ] RectalMucosa.chromatinStates.bed.gz         2017-03-13 11:05  2.0M  
[   ] HippocampusMiddle.chromatinStates.bed.gz    2017-03-13 11:05  1.9M  
[   ] MidFrontalLobe.chromatinStates.bed.gz       2017-03-13 11:05  1.9M  
[   ] HepG2.chromatinStates.bed.gz                2017-03-13 11:05  1.9M  
[   ] H1.chromatinStates.bed.gz                   2017-03-13 11:05  1.8M  
[   ] DuodenumMucosa.chromatinStates.bed.gz       2017-03-13 11:05  1.8M  
[   ] Islets.chromatinStates.bed.gz               2017-03-13 11:05  1.7M  
[   ] ColonicMucosa.chromatinStates.bed.gz        2017-03-13 11:05  1.7M  
[   ] RectalSmoothMuscle.chromatinStates.bed.gz   2017-03-13 11:05  1.6M  
[IMG] heatmap_emission.png                        2017-03-13 11:05  447K  
[TXT] model_13.txt                                2018-09-10 13:05   13K  
[TXT] sha256sum.txt                               2017-03-13 11:34  3.2K  
[TXT] emissions_statInfo.txt                      2017-03-13 11:05  1.7K